Showing posts with label Science. Show all posts
Showing posts with label Science. Show all posts

Wednesday, July 2, 2008

How plants fight back


Posted to ScienceCodex.com
on: May 10, 2007 - 5:34am

Rooted in place, plants can't run from herbivores—but they can fight back. Sensing attack, plants frequently generate toxins, emit volatile chemicals to attract the pest's natural enemies, or launch other defensive tactics.

Researchers have identified a specific class of small peptide elicitors, or plant defense signals, that help plants react to insect attack.

In this colorful self-defense strategy, proteins already present in the plant are ingested by insect attackers. Digesting the proteins, the insects unwittingly convert this food into a peptide elicitor, which gets secreted back onto plants during later feedings. Recognizing the secreted elicitor as a kind of "SOS," plants launch defensive chemistry. This defense discovery opens the door for the development and genetic manipulation of plants with improved protection against pests.
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Although researchers have long known that some plants distinguish different insect attackers, this defensive behavior has proven difficult to describe at the molecular level. Exceedingly few model systems have been utilized to characterize the potential interactions between what researchers estimate to be at least four million insects and 230,000 flowering plant species. Moreover, highly active plant defense signals can occur at trace levels, too small to easily detect or isolate.

Still, scientists have determined that insect herbivory, mechanical damage, and pathogens such as bacteria and fungi can all set off a variety of peptide warning signals in plants, which respond by increasing phytohormones, particularly ethylene, jasmonic acid, or salicylic acid, that regulate defensive responses. But which peptide signals act as alarms—and how"

To address those questions, Dr. Eric Schmelz at the United States Department of Agriculture's Center for Medical, Agricultural and Veterinary Entomology operated by the U.S. Department of Agriculture's Agricultural Research Service in Gainesville, Florida, led a research team that spent three years systematically analyzing the biochemical response of cowpea (Vigna unguiculata), a legume, to herbivory and oral secretions of fall armyworm (Spodoptera frugiperda), a general crop pest. During the extensive project, the researchers conducted over 10,000 leaf bioassays, testing for plant phytohormone production after exposure to successively fractionated insect oral secretions, among other experiments. Painstakingly collected just a few microliters at a time, the team tested approximately one full liter of caterpillar secretions.

As previously reported, the scientists identified and isolated an 11 amino acid peptide, inceptin, that plays a pivotal warning role in cowpea plants being attacked by the fall armyworm. Inceptin is part of a larger, essential enzyme, chloroplastic ATP synthase, in plants. When the fall armyworm feeds on cowpea, the insect ingests ATP synthase and breaks it down, releasing inceptin, which then becomes part of the armyworm's oral secretions. When the worm next feeds on cowpea, trace amounts of inceptin recontact the wounded leaf and alerts plants to generate a burst of defensive phytohormones.

In the June issue of Plant Physiology, Schmelz and his USDA collaborators, including Sherry LeClere, Mark Carroll, Hans Alborn, and Peter Teal, take the analysis further. They confirm inceptin's role as the dominant (and most stable) peptide in the cowpea's defense to fall armyworm. In addition, the researchers identify two related but less abundant peptide fragments (Vu-GE+In and Vu-E+In) that provoke similar defense responses in cowpea and a third (Vu-In-A) with no apparent effect. They also show that inceptin-related peptides spark a consistent, sequential cascade of phytohormone increases in cowpea, beginning with jasmonic acid, followed by ethylene and, lastly, salicyclic acid. Finally, the researchers determine critical features of inceptin's structure: To work as a plant defense signal, the peptide must contain a penultimate C-terminal aspartic acid, though the structure is considerably more flexible at its N-terminal. Notably, a number of the general characteristics of inceptin are similar to another known plant defensive peptide signal, systemin.

The new work challenges researchers to reconsider plant-insect interactions. "Scientists searching for defense elicitors need to realize those elicitors may not be synthesized by—or even exist within—the insect pest species," Schmelz said. "Instead, the attacker's proteases may interact with the host proteins, generating an elicitor." Building on this work, Schmelz is now recruiting a post-doctoral scientist to help the team biochemically purify and identify the inceptin receptor from legumes.

Friday, June 20, 2008

The Body's Own Facebook?


TimeOut: Istanbul (in English)

The Sixth Degree
With Ezgi Karaca


July 2008
By Ayşe Şahin

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If you get the way Facebook works, you could get the key to the causes of cancer. Don’t get it? Ayşe Şahin gets Ezgi Karaca to break it down for us.
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AS: At 25, you’ve attracted the attention of top schools around the world with the cutting-edge research you’ve been doing for your Master’s Degree in chemical engineering, in a little-known yet vital area of science called computational biology…

EK: Experiments on a molecular basis aren’t always enough, or feasible, in the search for treatments for incurable diseases. When that’s the case, analyses done via computers can provide us with answers. Computational biology has been around for about 50 years, but it’s only recently become a hot area of medical research. It’s really starting to explode nowadays. Pharmaceutical firms and the US government have been pouring a ton of money into it.

AS: You yourself are currently doing your research thanks to a TÜBİTAK (The Scientific & Technological Research Council of Turkey) scholarship that supports the work of young scientists. Where are you conducting your research?

EK: At the Polymer Research Center at Bosphorus University, under the guidance of one of Turkey’s youngest and most successful professors, Prof. Dr. Türkan Haliloğlu.

AS: Can you give us a brief description of what it is specifically that you’ve been researching?

EK: There is a tumor-suppressing mechanism within the human body, made up of various proteins that communicate with each other through social networks...

AS: Hmm... Like Facebook?

EK: Yes, you could say that. My work has concentrated on a tumor-suppressing protein known as p73, which belongs to the p53 family of proteins. One of the primary aims of this study is to try to determine what kinds of circumstances might prevent it from working. It can be inconsistent in the way it functions, and increase or decrease depending on a number of positive and negative influences. In fact, it isn’t even consistently present in the body. It can be synthesized or distributed based on need, or even destroyed by several different proteins.

AS: So there’s a certain economy at work here, and even, a cellular rivalry to speak of...

EK: Yes, it’s a matter of balance. What’s also interesting is that the cell has various “check points” to maintain this balance. If that balance has been upset in some way, a protein’s function and the state of the cell can change dramatically.

AS: Given the many factors at play in this area of chemical engineering, combining it with the discipline of computer science to study them sounds logical and obvious enough. Less so may be the potential for contributions from still other disciplines...

EK: Absolutely. Microbiology is a field that could benefit from the perspectives of chemistry and physics too, for example, and even economics or philosophy... There could be significant advances to be made from experts in all of these fields getting together to discuss this subject.

AS: Molecular dynamics research figures in your work in computational biology, as well…

EK: It does... The thing is that, even though there are software programs used to study molecular dynamics, there is no computer that can precisely simulate the behavior of cell activity – computers just aren’t powerful enough. There really is still so much we have yet to learn in this field... Yet we tend to be egotistical and superficial, and believe we’re far more powerful and knowing than we actually are. I think we’re actually weak and pitiful, and that we try to cover up that weakness by trying to beat down other people and other species.

AS: You also happen to be an experienced deep-sea diver...

EK: I’m a licensed one-star instructor, which means that I’m certified to guide one other person in a deep-sea diving expedition. The highest level is the 3-star instructor, where you’re certified to open courses to train new divers. This has been a hobby that’s been helpful in terms of other areas of my life too, without a doubt. Though unfortunately I’ve had to put it aside for the time being, to concentrate on my studies and finish interviewing for doctoral programs.

AS: Where have you interviewed?

EK: I’ve had interviews with the University of Cambridge, the University of Leeds, King’s College of London, the University of Barcelona, and Utrecht University.

AS: Rumor has it that you’ve got some good news to share with us?

EK: I’m due to start a PhD under the Department of Chemistry at Utrecht University, one of the leading schools for Life Sciences. My supervisor will be Dr. Alexandre Bonvin, who’s working on computational structural biology, especially on protein-protein interactions.

AS: Where do you see yourself 5 years down the road?

EK: I’d like to find a post-Doc position in a highly qualified and prestigious environment. Afterwards, I’d like to come back to Turkey to teach what I’ve learned over the years.

AS: And in the meantime...

EK: I’d like to see the Turkish government develop an initiative that promotes the return of Turkish scientists who’ve lived and achieved success in their careers abroad. The Catalanian government in Spain recently did this by establishing research institutes of high standards for Spanish scientists to conduct their work. As a result, students have begun to go to Spain, so that they can study with these scientists instead of with scientists in other European countries or in the States. Why shouldn’t Turkey do the same?

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Ms. Karaca's research will be published in Nucleic Acids Research Magazine soon.